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GWAS-related eQTLs across different cancer types

We identified 337,131 eQTLs that overlap with GWAS linkage disequilibrium (LD) regions (r² ≥ 0.5).



e.g., "STAD"
e.g., "r²>= 0.8"
e.g., "rs2273"
Cancer type
eQTL type
tagSNP
LD
SNP ID
SNP position (hg19)
Gene symbol
Gene position (hg19)
Beta
t-stat
p-value
GWAS-Traits
UVM cis rs10935120 1 rs6790466 chr3:134197740 ANAPC13 chr3:134196547-134204865:- 0.47 7.01 3.68E-9 Height
UVM cis rs10935120 1 rs6793487 chr3:134299426 ANAPC13 chr3:134196547-134204865:- -0.45 -6.73 1.03E-8 Height
UVM cis rs9876781 1 rs6794875 chr3:48455626 TREX1 chr3:48501186-48509043:+ -0.4 -5.1 4.38E-6 Longevity
UVM cis rs10935120 1 rs6800862 chr3:134228628 ANAPC13 chr3:134196547-134204865:- 0.46 7.06 3.0E-9 Height
UVM cis rs10935120 1 rs6801596 chr3:134252114 ANAPC13 chr3:134196547-134204865:- 0.46 6.87 6.1E-9 Height
UVM cis rs10935120 1 rs6802654 chr3:134217072 ANAPC13 chr3:134196547-134204865:- 0.46 7.06 3.0E-9 Height
UVM cis rs10935120 1 rs6804770 chr3:134230234 ANAPC13 chr3:134196547-134204865:- 0.46 7.06 3.0E-9 Height
UVM cis rs10935120 1 rs6806417 chr3:134211446 ANAPC13 chr3:134196547-134204865:- -0.45 -5.93 2.12E-7 Height
UVM cis rs9876781 1 rs6810060 chr3:48434748 TREX1 chr3:48501186-48509043:+ -0.38 -4.8 1.26E-5 Longevity
UVM cis rs6825268 1 rs6825268 chr4:26783453 STIM2 chr4:26862364-27025808:+ 0.47 4.71 1.7E-5 Schizophrenia
UVM cis rs2273 1 rs6827617 chr4:76916146 NAAA chr4:76831809-76862166:- -0.44 -4.99 6.33E-6 Longevity
UVM cis rs568617 1 rs687672 chr11:65649984 SNX32 chr11:65601410-65621170:+ -0.63 -5.51 9.72E-7 Crohn's disease
UVM cis rs10461617 1 rs6885541 chr5:56110857 C5orf35 chr5:56205103-56213010:+ 0.95 6.34 4.59E-8 Type 2 diabetes
UVM cis rs568617 1 rs693824 chr11:65654783 SNX32 chr11:65601410-65621170:+ 0.63 5.51 9.72E-7 Crohn's disease
UVM cis rs10242455 1 rs6948775 chr7:98945480 PTCD1 chr7:99016751-99063808:- 0.7 4.85 1.07E-5 Blood metabolite levels